Tag: reproducibility

A specific, opinionated toolchain for a single person's whole-genome, RNA-seq, proteomics, and CGM data: the tools we would run, the flags that matter, and the failure modes that silently corrupt results.

A working guide to setting up an R and Bioconductor project around a personal molecular profile: loading your VCF, quantifying your own RNA-seq across timepoints, normalizing proteomics, and joining biomarker and glucose time series into one analyzable object.