Tag: open-source

A specific, opinionated toolchain for a single person's whole-genome, RNA-seq, proteomics, and CGM data: the tools we would run, the flags that matter, and the failure modes that silently corrupt results.

A working pipeline for analyzing your own DNA with open source tools, from array raw data to whole-genome FASTQ, including the annotation databases, the commands, and the failure modes that produce wrong answers.