Running TopHat for RNA-Seq, and What to Run Instead
A working guide to the TopHat/TopHat2 spliced alignment pipeline: when to use it, the exact commands, and the HISAT2 and salmon pipelines we would use for a personal transcriptome today.
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A working guide to the TopHat/TopHat2 spliced alignment pipeline: when to use it, the exact commands, and the HISAT2 and salmon pipelines we would use for a personal transcriptome today.