How to Annotate Your Own RNA-Seq Data
A working guide to turning RNA-seq quantifications into an annotated, versioned gene table. Covers choosing an annotation, tx2gene and biotypes.
Tag: gencode
2 posts
How to Choose and Build a Reference Genome for RNA-seq
A practical guide to picking a human genome build and annotation for RNA-seq, building STAR and salmon indexes correctly, and checking that the reference you built is the one your quantification assumes.